Rice University

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Rice University is a selective, private, independent, university located on a 300-acre wooded campus in Houston, Texas. Rice is consistently ranked one of America's best teaching and research universities.

Rice University's Articles

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Cellular clarity: a logistic regression approach to identify root epidermal regulators of iron deficiency response

Authors: Selene R. Schmittling, DurreShahwar Muhammad, Samiul Haque, Terri A. Long and Cranos M. Williams

Citation: BMC Genomics 2023 24:620

Content type: Research Published on: 18 October 2023
Genomic variant benchmark: if you cannot measure it, you cannot improve it

Authors: Sina Majidian, Daniel Paiva Agustinho, Chen-Shan Chin, Fritz J. Sedlazeck and Medhat Mahmoud

Citation: Genome Biology 2023 24:221

Content type: Review Published on: 5 October 2023
Ethical, legal, regulatory, and policy issues concerning embryoids: a systematic review of the literature

Authors: Ana S. Iltis, Grace Koster, Emily Reeves and Kirstin R. W. Matthews

Citation: Stem Cell Research & Therapy 2023 14:209

Content type: Review Published on: 21 August 2023
Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes

Authors: Francisco Avila Cobos, Mohammad Javad Najaf Panah, Jessica Epps, Xiaochen Long, Tsz-Kwong Man, Hua-Sheng Chiu, Elad Chomsky, Evgeny Kiner, Michael J. Krueger, Diego di Bernardo, Luis Voloch, Jan Molenaar, Sander R. van Hooff, Frank Westermann, Selina Jansky, Michele L. Redell…

Citation: Genome Biology 2023 24:177

Content type: Research Published on: 1 August 2023
Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon

Authors: Roman Jaksik, David A. Wheeler and Marek Kimmel

Citation: BMC Biology 2023 21:41

Content type: Research article Published on: 24 February 2023
FixItFelix: improving genomic analysis by fixing reference errors

Authors: Sairam Behera, Jonathon LeFaive, Peter Orchard, Medhat Mahmoud, Luis F. Paulin, Jesse Farek, Daniela C. Soto, Stephen C. J. Parker, Albert V. Smith, Megan Y. Dennis, Justin M. Zook and Fritz J. Sedlazeck

Citation: Genome Biology 2023 24:31

Content type: Method Published on: 21 February 2023
Chromosome-length genome assembly of Teladorsagia circumcincta – a globally important helminth parasite in livestock

Authors: Shamshad Ul Hassan, Eng Guan Chua, Erwin A. Paz, Chin Yen Tay, Johan C. Greeff, Dieter G. Palmer, Olga Dudchenko, Erez Lieberman Aiden, Graeme B. Martin and Parwinder Kaur

Citation: BMC Genomics 2023 24:74

Content type: Research Published on: 15 February 2023
Associations between teamwork and implementation outcomes in multidisciplinary cross-sector teams implementing a mental health screening and referral protocol

Authors: Elizabeth A. McGuier, Gregory A. Aarons, Kara A. Byrne, Kristine A. Campbell, Brooks Keeshin, Scott D. Rothenberger, Laurie R. Weingart, Eduardo Salas and David J. Kolko

Citation: Implementation Science Communications 2023 4:13

Content type: Research Published on: 10 February 2023
The swan genome and transcriptome, it is not all black and white

Authors: Anjana C. Karawita, Yuanyuan Cheng, Keng Yih Chew, Arjun Challagulla, Robert Kraus, Ralf C. Mueller, Marcus Z. W. Tong, Katina D. Hulme, Helle Bielefeldt-Ohmann, Lauren E. Steele, Melanie Wu, Julian Sng, Ellesandra Noye, Timothy J. Bruxner, Gough G. Au, Suzanne Lowther…

Citation: Genome Biology 2023 24:13

Content type: Research Published on: 23 January 2023
Appealing dish names to nudge diners to more sustainable food choices: a quasi-experimental study

Authors: Anna Gavrieli, Sophie Attwood, Jonathan Wise, Eleanor Putnam-Farr, Paul Stillman, Scott Giambastiani, Jane Upritchard, Chavanne Hanson and Michiel Bakker

Citation: BMC Public Health 2022 22:2229

Content type: Research Published on: 30 November 2022
An mRNA-based rabies vaccine induces strong protective immune responses in mice and dogs

Authors: Jianglong Li, Qi Liu, Jun Liu, Xiaohong Wu, Yixin Lei, Shuang Li, Danhua Zhao, Zhi Li, Liping Luo, Sophia Peng, Yingrao Ou, Hong Yang, Jing Jin, Yuhua Li and Yucai Peng

Citation: Virology Journal 2022 19:184

Content type: Research Published on: 12 November 2022
Sequencing individual genomes with recurrent genomic disorder deletions: an approach to characterize genes for autosomal recessive rare disease traits

Authors: Bo Yuan, Katharina V. Schulze, Nurit Assia Batzir, Jefferson Sinson, Hongzheng Dai, Wenmiao Zhu, Francia Bocanegra, Chin-To Fong, Jimmy Holder, Joanne Nguyen, Christian P. Schaaf, Yaping Yang, Weimin Bi, Christine Eng, Chad Shaw, James R. Lupski…

Citation: Genome Medicine 2022 14:113

Content type: Research Published on: 30 September 2022
Correction to: Analysis of sex-based differences in clinical and molecular responses to ischemia reperfusion after lung transplantation

Authors: Lourdes Chacon-Alberty, Shengbin Ye, Daoud Daoud, William C. Frankel, Hassan Virk, Jonathan Mase, Camila Hochman-Mendez, Meng Li, Luiz C. Sampaio, Doris A. Taylor and Gabriel Loor

Citation: Respiratory Research 2022 23:234

Content type: Correction Published on: 7 September 2022

The original article was published in Respiratory Research 2021 22:318
Multiple genome alignment in the telomere-to-telomere assembly era

Authors: Bryce Kille, Advait Balaji, Fritz J. Sedlazeck, Michael Nute and Todd J. Treangen

Citation: Genome Biology 2022 23:182

Content type: Review Published on: 29 August 2022
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning

Authors: Advait Balaji, Bryce Kille, Anthony D. Kappell, Gene D. Godbold, Madeline Diep, R. A. Leo Elworth, Zhiqin Qian, Dreycey Albin, Daniel J. Nasko, Nidhi Shah, Mihai Pop, Santiago Segarra, Krista L. Ternus and Todd J. Treangen

Citation: Genome Biology 2022 23:133

Content type: Software Published on: 20 June 2022
Derivation and performance of an end-of-life practice score aimed at interpreting worldwide treatment-limiting decisions in the critically ill

Authors: Spyros D. Mentzelopoulos, Su Chen, Joseph L. Nates, Jacqueline M. Kruser, Christiane Hartog, Andrej Michalsen, Nikolaos Efstathiou, Gavin M. Joynt, Suzana Lobo, Alexander Avidan and Charles L. Sprung

Citation: Critical Care 2022 26:106

Content type: Research Published on: 13 April 2022
Feasibility, acceptability, and short-term impact of a brief sexually transmitted infection intervention targeting U.S. Military personnel and family members

Authors: Anjali Kunz, Amber Moodley, Donn J. Colby, Michele Soltis, Wesley Robb-McGrath, Alexandra Fairchok, Paul Faestel, Amanda Jungels, Alexis A. Bender, Edwin Kamau, Gina Wingood, Ralph DiClemente and Paul Scott

Citation: BMC Public Health 2022 22:640

Content type: Research Published on: 2 April 2022
A CRISPR toolbox for generating intersectional genetic mouse models for functional, molecular, and anatomical circuit mapping

Authors: Savannah J. Lusk, Andrew McKinney, Patrick J. Hunt, Paul G. Fahey, Jay Patel, Andersen Chang, Jenny J. Sun, Vena K. Martinez, Ping Jun Zhu, Jeremy R. Egbert, Genevera Allen, Xiaolong Jiang, Benjamin R. Arenkiel, Andreas S. Tolias, Mauro Costa-Mattioli and Russell S. Ray

Citation: BMC Biology 2022 20:28

Content type: Methodology article Published on: 28 January 2022
Sensei: how many samples to tell a change in cell type abundance?

Authors: Shaoheng Liang, Jason Willis, Jinzhuang Dou, Vakul Mohanty, Yuefan Huang, Eduardo Vilar and Ken Chen

Citation: BMC Bioinformatics 2022 23:2

Content type: Research Published on: 4 January 2022
Analysis of sex-based differences in clinical and molecular responses to ischemia reperfusion after lung transplantation

Authors: Lourdes Chacon-Alberty, Shengbin Ye, Daoud Daoud, William C. Frankel, Hassan Virk, Jonathan Mase, Camila Hochman-Mendez, Meng Li, Luiz C. Sampaio, Doris A. Taylor and Gabriel Loor

Citation: Respiratory Research 2021 22:318

Content type: Research Published on: 22 December 2021

The Correction to this article has been published in Respiratory Research 2022 23:234