EPF Lausanne

1. Stable isotope labeling and ultra-high-resolution NanoSIMS imaging reveal alpha-synuclein-induced changes in neuronal metabolism in vivo

   Authors: Sofia Spataro, Bohumil Maco, Stéphane Escrig, Louise Jensen, Lubos Polerecky, Graham Knott, Anders Meibom and Bernard L. Schneider

   Citation: Acta Neuropathologica Communications 2023 11:157

   Content type: Research Published on: 29 September 2023

2. Sulfur-cycling chemolithoautotrophic microbial community dominates a cold, anoxic, hypersaline Arctic spring

   Authors: Elisse Magnuson, Ianina Altshuler, Nastasia J. Freyria, Richard J. Leveille and Lyle G. Whyte

   Citation: Microbiome 2023 11:203

   Content type: Research Published on: 11 September 2023

3. Overexpression of human alpha-Synuclein leads to dysregulated microbiome/metabolites with ageing in a rat model of Parkinson disease

   Authors: Yogesh Singh, Christoph Trautwein, Joan Romani, Madhuri S. Salker, Peter H. Neckel, Isabel Fraccaroli, Mahkameh Abeditashi, Nils Woerner, Jakob Admard, Achal Dhariwal, Morten K. D. Dueholm, Karl-Herbert Schäfer, Florian Lang, Daniel E. Otzen, Hilal A. Lashuel, Olaf Riess…

   Citation: Molecular Neurodegeneration 2023 18:44

   Content type: Research article Published on: 4 July 2023

4. Correlated cryo-SEM and CryoNanoSIMS imaging of biological tissue

   Authors: Anders Meibom, Florent Plane, Tian Cheng, Gilles Grandjean, Olivier Haldimann, Stephane Escrig, Louise Jensen, Jean Daraspe, Antonio Mucciolo, Damien De Bellis, Nils Rädecker, Cristina Martin-Olmos, Christel Genoud and Arnaud Comment

   Citation: BMC Biology 2023 21:126

   Content type: Methodology article Published on: 7 June 2023

5. Secondary structure of the human mitochondrial genome affects formation of deletions

   Authors: Victor Shamanskiy, Alina A. Mikhailova, Evgenii O. Tretiakov, Kristina Ushakova, Alina G. Mikhailova, Sergei Oreshkov, Dmitry A. Knorre, Natalia Ree, Jonathan B. Overdevest, Samuel W. Lukowski, Irina Gostimskaya, Valerian Yurov, Chia-Wei Liou, Tsu-Kung Lin, Wolfram S. Kunz, Alexandre Reymond…

   Citation: BMC Biology 2023 21:103

   Content type: Research article Published on: 8 May 2023

6. Notch1 signaling is limited in healthy mature kidneys in vivo

   Authors: Ryosuke Sugiura, Takahiro Nakayama, Teppei Nishino, Naoto Sambe, Freddy Radtke, Masaharu Yoshihara and Satoru Takahashi

   Citation: BMC Research Notes 2023 16:54

   Content type: Research Note Published on: 17 April 2023

7. Environmental determinants of access to shared sanitation in informal settlements: a cross-sectional study in Abidjan and Nairobi

   Authors: Vitor Pessoa Colombo, Jérôme Chenal, Fred Orina, Hellen Meme, Jeanne d’Arc Amoin Koffi, Brama Koné and Jürg Utzinger

   Citation: Infectious Diseases of Poverty 2023 12:34

   Content type: Research Article Published on: 10 April 2023

   

8. CenFind: a deep-learning pipeline for efficient centriole detection in microscopy datasets

   Authors: Léo Bürgy, Martin Weigert, Georgios Hatzopoulos, Matthias Minder, Adrien Journé, Sahand Jamal Rahi and Pierre Gönczy

   Citation: BMC Bioinformatics 2023 24:120

   Content type: Software Published on: 28 March 2023

9. Prominent astrocytic alpha-synuclein pathology with unique post-translational modification signatures unveiled across Lewy body disorders

   Authors: Melek Firat Altay, Alan King Lun Liu, Janice L. Holton, Laura Parkkinen and Hilal A. Lashuel

   Citation: Acta Neuropathologica Communications 2022 10:163

   Content type: Research Published on: 12 November 2022

10. The combined impact of persistent infections and human genetic variation on C-reactive protein levels

    Authors: Flavia Hodel, Olivier Naret, Clara Bonnet, Nicole Brenner, Noemi Bender, Tim Waterboer, Pedro Marques-Vidal, Peter Vollenweider and Jacques Fellay

    Citation: BMC Medicine 2022 20:416

    Content type: Research article Published on: 1 November 2022

11. Scientific rewards for biomedical specialization are large and persistent

    Authors: Gaétan de Rassenfosse, Kyle Higham and Orion Penner

    Citation: BMC Biology 2022 20:211

    Content type: Research article Published on: 30 September 2022

12. A multicenter, randomized, double-blind, placebo-controlled trial to test efficacy and safety of transcranial direct current stimulation to the motor cortex after stroke (NETS): study protocol

    Authors:

    Citation: Neurological Research and Practice 2022 4:14

    Content type: Clinical trial protocol Published on: 18 April 2022

13. KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences

    Authors: Alexandra Iouranova, Delphine Grun, Tamara Rossy, Julien Duc, Alexandre Coudray, Michael Imbeault, Jonas de Tribolet-Hardy, Priscilla Turelli, Alexandre Persat and Didier Trono

    Citation: Mobile DNA 2022 13:4

    Content type: Research Published on: 18 January 2022

14. baredSC: Bayesian approach to retrieve expression distribution of single-cell data

    Authors: Lucille Lopez-Delisle and Jean-Baptiste Delisle

    Citation: BMC Bioinformatics 2022 23:36

    Content type: Research article Published on: 12 January 2022

15. Review of control strategies for lower-limb exoskeletons to assist gait

    Authors: Romain Baud, Ali Reza Manzoori, Auke Ijspeert and Mohamed Bouri

    Citation: Journal of NeuroEngineering and Rehabilitation 2021 18:119

    Content type: Review Published on: 27 July 2021

16. Enabling reproducible re-analysis of single-cell data

    Authors: Michael A. Skinnider, Jordan W. Squair and Grégoire Courtine

    Citation: Genome Biology 2021 22:215

    Content type: Editorial Published on: 26 July 2021

17. Clinical value of assessing motor performance in postacute stroke patients

    Authors: D. Flury, F. Massé, A. Paraschiv-Ionescu, K. Aminian, A. R. Luft and R. Gonzenbach

    Citation: Journal of NeuroEngineering and Rehabilitation 2021 18:102

    Content type: Research Published on: 24 June 2021

18. Investigating the effects of substrate morphology and experimental conditions on the enzymatic hydrolysis of lignocellulosic biomass through modeling

    Authors: Jessica C. Rohrbach and Jeremy S. Luterbacher

    Citation: Biotechnology for Biofuels 2021 14:103

    Content type: Research Published on: 26 April 2021

19. The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

    Authors: Tuure Hameri, Georgios Fengos and Vassily Hatzimanikatis

    Citation: BMC Bioinformatics 2021 22:134

    Content type: Methodology article Published on: 20 March 2021

20. Is preoperative glenoid bone mineral density associated with aseptic glenoid implant loosening in anatomic total shoulder arthroplasty?

    Authors: Sandrine Mariaux, Raphaël Obrist, Alain Farron, Fabio Becce and Alexandre Terrier

    Citation: BMC Musculoskeletal Disorders 2021 22:49

    Content type: Research article Published on: 8 January 2021